Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs77475957 | chr7:150737005 | C/A | 0.000154 | 404 | 15.32 | 14.37 | 8.97 | KM Plot |
| LGG | rs7747846 | chr6:36038884 | T/C | 1.08E-9 | 405 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs7748078 | chr6:36048010 | G/A | 1.03E-9 | 405 | 15.57 | 15.18 | 6.15 | KM Plot |
| LGG | rs77488851 | chr20:3348808 | C/T | 1.08E-7 | 405 | 15.95 | 11.55 | 6.83 | KM Plot |
| LGG | rs7749595 | chr6:166687374 | A/C | 0 | 407 | 15.17 | 17.67 | 3.77 | KM Plot |
| LGG | rs7749960 | chr6:57045556 | C/A | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs77510589 | chr15:84461862 | C/G | 2.22E-16 | 403 | 15.3 | 16.38 | 6.6 | KM Plot |
| LGG | rs7752459 | chr6:36084672 | C/T | 9.55E-15 | 407 | 15.6 | 15.15 | 5.3 | KM Plot |
| LGG | rs77543199 | chr18:9849444 | A/C | 1.26E-6 | 406 | 15.67 | 11.63 | 12.22 | KM Plot |
| LGG | rs77544316 | chr7:64929412 | A/T | 7.7E-8 | 394 | 15.32 | 15.28 | 2.27 | KM Plot |
| LGG | rs7756172 | chr6:46928442 | C/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs77589079 | chr14:74366306 | T/C | 0 | 406 | 14.92 | 17.03 | 1.23 | KM Plot |
| LGG | rs7759175 | chr6:36013024 | C/T | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs7760405 | chr6:36073831 | G/A | 8.93E-5 | 407 | 15.47 | 15.27 | 7 | KM Plot |
| LGG | rs7760578 | chr6:36008063 | A/G | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |